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Genetic Predisposition to Disease
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Blue EE
,
Yu C-E
,
Thornton TA
,
Chapman NH
,
Kernfeld E
,
Jiang N
,
Shively KM
,
Buckingham KJ
,
Marvin CT
,
Bamshad MJ
et al.
. 2018.
Variants regulating ZBTB4 are associated with age-at-onset of Alzheimer's disease.
.
Genes Brain Behav. 17(6):e12429.
PubMed
U
Amlie-Wolf A
,
Kuksa PP
,
Lee C-Y
,
Mlynarski E
,
Leung YYee
,
San Wang L-
. 2021.
Using INFERNO to Infer the Molecular Mechanisms Underlying Noncoding Genetic Associations.
.
Methods Mol Biol. 2254:73-91.
PubMed
T
Pathak GA
,
Zhou Z
,
Silzer TK
,
Barber RC
,
Phillips NR
. 2020.
Two-stage Bayesian GWAS of 9576 individuals identifies SNP regions that are targeted by miRNAs inversely expressed in Alzheimer's and cancer.
.
Alzheimers Dement. 16(1):162-177.
PubMed
Li Z
,
Farias FHG
,
Dube U
,
Del-Aguila JL
,
Mihindukulasuriya KA
,
Fernández MVictoria
,
Ibañez L
,
Budde JP
,
Wang F
,
Lake AM
et al.
. 2020.
The TMEM106B FTLD-protective variant, rs1990621, is also associated with increased neuronal proportion.
.
Acta Neuropathol. 139(1):45-61.
PubMed
Ramdhani S
,
Navarro E
,
Udine E
,
Efthymiou AG
,
Schilder BM
,
Parks M
,
Goate A
,
Raj T
. 2020.
Tensor decomposition of stimulated monocyte and macrophage gene expression profiles identifies neurodegenerative disease-specific trans-eQTLs.
.
PLoS Genet. 16(2):e1008549.
PubMed
S
Ebbert MTW
,
Jensen TD
,
Jansen-West K
,
Sens JP
,
Reddy JS
,
Ridge PG
,
Kauwe JSK
,
Belzil V
,
Pregent L
,
Carrasquillo MM
et al.
. 2019.
Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight.
.
Genome Biol. 20(1):97.
PubMed
Patel D
,
Zhang X
,
Farrell JJ
,
Lunetta KL
,
Farrer LA
. 2021.
Set-Based Rare Variant Expression Quantitative Trait Loci in Blood and Brain from Alzheimer Disease Study Participants.
.
Genes (Basel). 12(3)
PubMed
R
Zhang Q
,
Sidorenko J
,
Couvy-Duchesne B
,
Marioni RE
,
Wright MJ
,
Goate AM
,
Marcora E
,
Huang K-L
,
Porter T
,
Laws SM
et al.
. 2020.
Risk prediction of late-onset Alzheimer's disease implies an oligogenic architecture.
.
Nat Commun. 11(1):4799.
PubMed
Hartl D
,
May P
,
Gu W
,
Mayhaus M
,
Pichler S
,
Spaniol C
,
Glaab E
,
Bobbili DReddy
,
Antony P
,
Koegelsberger S
et al.
. 2020.
A rare loss-of-function variant of ADAM17 is associated with late-onset familial Alzheimer disease.
.
Mol Psychiatry. 25(3):629-639.
PubMed
P
Tang Z-Z
,
Sliwoski GR
,
Chen G
,
Jin B
,
Bush WS
,
Li B
,
Capra JA
. 2020.
PSCAN: Spatial scan tests guided by protein structures improve complex disease gene discovery and signal variant detection.
.
Genome Biol. 21(1):217.
PubMed
Sariya S
,
Felsky D
,
Reyes-Dumeyer D
,
Lali R
,
Lantigua RA
,
Vardarajan B
,
Jimenez-Velazquez IZ
,
Haines JL
,
Shellenberg GD
,
Pericak-Vance MA
et al.
. 2021.
Polygenic Risk Score for Alzheimer's Disease in Caribbean Hispanics.
.
Ann Neurol. 90(3):366-376.
PubMed
N
Kunkle BW
,
Schmidt M
,
Klein H-U
,
Naj AC
,
Hamilton-Nelson KL
,
Larson EB
,
Evans DA
,
De Jager PL
,
Crane PK
,
Buxbaum JD
et al.
. 2021.
Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.
.
JAMA Neurol. 78(1):102-113.
PubMed
M
Strickland SL
,
Reddy JS
,
Allen M
,
N'songo A
,
Burgess JD
,
Corda MM
,
Ballard T
,
Wang X
,
Carrasquillo MM
,
Biernacka JM
et al.
. 2020.
MAPT haplotype-stratified GWAS reveals differential association for AD risk variants.
.
Alzheimers Dement. 16(7):983-1002.
PubMed
L
Barral S
,
Cheng R
,
Reitz C
,
Vardarajan B
,
Lee J
,
Kunkle B
,
Beecham G
,
Cantwell LS
,
Pericak-Vance MA
,
Farrer LA
et al.
. 2015.
Linkage analyses in Caribbean Hispanic families identify novel loci associated with familial late-onset Alzheimer's disease.
.
Alzheimers Dement. 11(12):1397-1406.
PubMed
Kirola L
,
Budde JP
,
Wang F
,
Norton J
,
Morris JC
,
Cruchaga C
,
Fernández MVictoria
. 2021.
Lack of evidence supporting a role for DPP6 sequence variants in Alzheimer's disease in the European American population.
.
Acta Neuropathol. 141(4):623-624.
PubMed
I
Andrews SJ
,
Fulton-Howard B
,
Goate A
. 2020.
Interpretation of risk loci from genome-wide association studies of Alzheimer's disease.
.
Lancet Neurol. 19(4):326-335.
PubMed
Novikova G
,
Kapoor M
,
Tcw J
,
Abud EM
,
Efthymiou AG
,
Chen SX
,
Cheng H
,
Fullard JF
,
Bendl J
,
Liu Y
et al.
. 2021.
Integration of Alzheimer's disease genetics and myeloid genomics identifies disease risk regulatory elements and genes.
.
Nat Commun. 12(1):1610.
PubMed
Amlie-Wolf A
,
Tang M
,
Mlynarski EE
,
Kuksa PP
,
Valladares O
,
Katanić Ž
,
Tsuang D
,
Brown CD
,
Schellenberg GD
,
San Wang L-
. 2018.
INFERNO: inferring the molecular mechanisms of noncoding genetic variants.
.
Nucleic Acids Res. 46(17):8740-8753.
PubMed
Baird DA
,
Liu JZ
,
Zheng J
,
Sieberts SK
,
Perumal T
,
Elsworth B
,
Richardson TG
,
Chen C-Y
,
Carrasquillo MM
,
Allen M
et al.
. 2021.
Identifying drug targets for neurological and psychiatric disease via genetics and the brain transcriptome.
.
PLoS Genet. 17(1):e1009224.
PubMed
He Z
,
Liu L
,
Wang C
,
Le Guen Y
,
Lee J
,
Gogarten S
,
Lu F
,
Montgomery S
,
Tang H
,
Silverman EK
et al.
. 2021.
Identification of putative causal loci in whole-genome sequencing data via knockoff statistics.
.
Nat Commun. 12(1):3152.
PubMed
G
Marioni RE
,
Harris SE
,
Zhang Q
,
McRae AF
,
Hagenaars SP
,
W Hill D
,
Davies G
,
Ritchie CW
,
Gale CR
,
Starr JM
et al.
. 2018.
GWAS on family history of Alzheimer's disease.
.
Transl Psychiatry. 8(1):99.
PubMed
Kunkle BW
,
Jaworski J
,
Barral S
,
Vardarajan B
,
Beecham GW
,
Martin ER
,
Cantwell LS
,
Partch A
,
Bird TD
,
Raskind WH
et al.
. 2016.
Genome-wide linkage analyses of non-Hispanic white families identify novel loci for familial late-onset Alzheimer's disease.
.
Alzheimers Dement. 12(1):2-10.
PubMed
Huan T
,
Joehanes R
,
Song C
,
Peng F
,
Guo Y
,
Mendelson M
,
Yao C
,
Liu C
,
Ma J
,
Richard M
et al.
. 2019.
Genome-wide identification of DNA methylation QTLs in whole blood highlights pathways for cardiovascular disease.
.
Nat Commun. 10(1):4267.
PubMed
Wang H
,
Bennett DA
,
De Jager PL
,
Zhang Q-Y
,
Zhang H-Y
. 2021.
Genome-wide epistasis analysis for Alzheimer's disease and implications for genetic risk prediction.
.
Alzheimers Res Ther. 13(1):55.
PubMed
de Vries PS
,
Sabater-Lleal M
,
Huffman JE
,
Marten J
,
Song C
,
Pankratz N
,
Bartz TM
,
de Haan HG
,
Delgado GE
,
Eicher JD
et al.
. 2019.
A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.
.
Blood. 133(9):967-977.
PubMed
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