Release Notes

GenomicsDB Version 3.3

  • Version: 3.3
  • Release Date: 10-12-2018
  • Release Notes:
    • New NIAGADS GWAS Summary Statistics Datasets added: NG00052
    • ADSP Annotation (NG00061) now available, including ADSP variants, QC filters, and ADSP variant tracks on the genome browser
    • ADSP Case/Control Gene-level rare-variant aggregation AD-association tests (NG00065) added
    • NEW Variant Annotations: ExAC allele frequencies, CADD deleterious, CATO transcription factor binding site overlap
    • NEW Feature: Filter Variant results for ADSP variants: see it in action

GenomicsDB Version 3.2

  • Version: 3.2
  • Release Date: 04-12-2018
  • Release Notes:
    • NEW Feature: Filter Variant search results by top predicted SnpEff Effect: see it in action
    • Bug Fix: Stop including deprecated merged/refSNP IDs GWAS summary statistic search results.

GenomicsDB Version 3.1

  • Version: 3.1
  • Release Date: 12-12-2017
  • Release Notes:
    • New NIAGADS GWAS Summary Statistics Datasets added: NG00053, NG00055, NG00056

GenomicsDB Version 3.0

  • Version: 3.0
  • Release Date: 10-13-2017
  • Release Notes:
    • New look for website.
    • Improved visualization of summary statistics genome browser tracks.
    • Adopted positional variant identifiers (chr:pos:ref:alt) allow more precise linkage of annotations to variants.
    • Improved mapping of NIAGADS summary statistics to reference variants using positional identifiers.
    • Moved to Ensembl for the gene reference; NCBI and Ensembl gene tracks available on the Genome Browser.
    • Gene annotation (e.g., KEGG, GO) updated to match Ensembl reference.
    • dbSNP updated to b147

GenomicsDB Version 2.1

  • Version: 2.1
  • Release Date: 09-13-2016
  • Release Notes:
    • New NIAGADS GWAS Summary Statistics datasets added: NG00045, NG00048, and NG00049.
    • Search strategies illustrating example queries for exploring these and related datasets have also been added.
    • p-values (and -log10 p-values) associated with specific variants can now be viewed on genome browser GWAS summary statistics tracks by mousing over the vertical bars on the track.

GenomicsDB Version 2.0

  • Version: 2.0
  • Release Date: 03-21-2016
  • Release Notes:
    • New NIAGADS GWAS Summary Statistics Datasets added: NG00040, NG00041
    • FANTOM5 feature tracks now searchable.
    • ENCODE feature tracks now searchable.
    • Registered users can create custom gene, SNP, or region lists by selecting records and adding them to a basket for later use.
    • Genome view of search results now available.
    • Functional enrichment analysis of gene results now available.
    • Common and full dbSNP tracks available on genome browser.
    • Improved track selection on genome browser.
    • New interactive search interface.

GenomicsDB Version 1.1

  • Version: 1.1
  • Release Date: 02-03-2015
  • Release Notes:
    • IGAP GWAS Summary Statistics (NG00036) now available.
    • Select functional genomics tracks from ENCODE and FANTOM5 added to genome browser.
    • Genome browser has been updated with an enhanced track selection tool that makes it easier to find tracks of interest.

GenomicsDB Version 1.0

  • Version: 1.0
  • Release Date: 01-14-2014