chr11:47638867-47664175

25308 bp

More information

1 gene is contained within or overlaps this genomic region:

Genomic Context

The genome browser snapshot is fully interactive. Mouse over track elements for more information. Click and drag to move tracks. Click and drag on top positional guide to zoom to a sub-region.

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Genetic Variation and Variant-based Trait Associations (GWAS)

Variants contained within the region chr11:47638867-47664175.

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1,637 variant records to (corresponding to 1,552 unique genomic positions) are contained within the region chr11:47638867-47664175.

Of these, the following were found to have genome-wide significance in a NIAGADS dataset or the NHGRI GWAS Catalog:

NIAGADS: Alzheimer's Disease

NIAGADS AD GWAS summary statistics datasets in which colocated variants have a genome-wide significance supported by a p-value ≤ 5 x 10-8.

For exome array studies, a cutoff of p-value < 1 x 10-3 was used.

Click on accession numbers to view a detailed report about the dataset or to request access to the data.

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Variant Allele p-Value Track Accession
N/A 2.8e-15 ADSP Single-Variant Risk Association: Caribbean Hispanic (Model 1) NG00065
N/A 2.8e-15 ADSP Single-Variant Risk Association: meta analysis (Model 1) NG00065
N/A 2.8e-15 ADSP Single-Variant Risk Association: European (Model 1) NG00065
N/A 8.6e-14 ADSP Single-Variant Risk Association: meta analysis (Model 1) NG00065
N/A 8.6e-14 ADSP Single-Variant Risk Association: European (Model 1) NG00065
N/A 8.6e-14 ADSP Single-Variant Risk Association: Caribbean Hispanic (Model 1) NG00065
N/A 1.9e-13 ADSP Single-Variant Risk Association: meta analysis (Model 2) NG00065
N/A 1.9e-13 ADSP Single-Variant Risk Association: European (Model 2) NG00065
N/A 1.9e-13 ADSP Single-Variant Risk Association: Caribbean Hispanic (Model 2) NG00065

NHGRI: Alzheimer's Disease

Alzheimer's Disease-related annotations for the dbSNP refSNPs contained within this region in the NHGRI GWAS Catalog.

NIAGADS: Related neuropathologies and AD biomarkers

NIAGADS AD GWAS summary statistics datasets in which colocated variants have a genome-wide significance supported by a p-value ≤ 5 x 10-8.

For exome array studies, a cutoff of p-value < 1 x 10-3 was used.

Click on accession numbers to view a detailed report about the dataset or to request access to the data.

NHGRI: Other Traits (incl. related neuropathologies and AD biomarkers)

Trait associations for the dbSNP refSNP contained with this region in the NHGRI GWAS Catalog.

Functional Genomics

Genomic regions associated with significant scores or peaks in a functional genomics anlaysis that are located within this span.

See the documentation documentation for more information on the functional genomics tracks.

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To view functional genomics annotations on the genome browser, first select tracks in the table below and then use the provided button to load the tracks on the browser.

Track #Hits Characteristics Track Type Platform
H4K20me1 HM ChIP-seq on human NH-A
9 histone peak ChIP-seq
H3K36me3 HM ChIP-seq on human NH-A
3 histone peak ChIP-seq
H3K9ac HM ChIP-seq on human NH-A
3 histone peak ChIP-seq
H3K4me1 HM ChIP-seq on human NH-A
2 histone peak ChIP-seq
H3K27ac HM ChIP-seq on human NH-A
2 histone peak ChIP-seq
H3K4me2 HM ChIP-seq on human NH-A
2 histone peak ChIP-seq
H3K4me3 HM ChIP-seq on human NH-A
2 histone peak ChIP-seq
H3K79me2 HM ChIP-seq on human NH-A
1 histone peak ChIP-seq
CTCF TFBS ChIP-seq on human HA-sp
2 transcription factor binding site ChIP-seq
CTCF TFBS ChIP-seq on human Gliobla
2 transcription factor binding site ChIP-seq
CTCF TFBS ChIP-seq on human HBMEC
2 transcription factor binding site ChIP-seq
TAF1 TFBS ChIP-seq on human SK-N-SH
1 transcription factor binding site ChIP-seq
YY1 TFBS ChIP-seq on human SK-N-SH_RA
1 transcription factor binding site ChIP-seq
POLR2A TFBS ChIP-seq on human SK-N-SH
1 transcription factor binding site ChIP-seq
CTCF TFBS ChIP-seq on human NH-A
1 transcription factor binding site ChIP-seq
CTCF TFBS ChIP-seq on human SK-N-SH_RA
1 transcription factor binding site ChIP-seq
REST TFBS ChIP-seq on human U87
1 transcription factor binding site ChIP-seq
CTCF TFBS ChIP-seq on human BE2-C
1 transcription factor binding site ChIP-seq
USF1 TFBS ChIP-seq on human SK-N-SH_RA
1 transcription factor binding site ChIP-seq
CTCF TFBS ChIP-seq on human SK-N-SH_RA
1 transcription factor binding site ChIP-seq
POLR2A TFBS ChIP-seq on human U87
1 transcription factor binding site ChIP-seq
TAF1 TFBS ChIP-seq on human PFSK-1
1 transcription factor binding site ChIP-seq
FOXP2 TFBS ChIP-seq on human PFSK-1
1 transcription factor binding site ChIP-seq
RAD21 TFBS ChIP-seq on human SK-N-SH_RA
1 transcription factor binding site ChIP-seq
POLR2A TFBS ChIP-seq on human Gliobla
1 transcription factor binding site ChIP-seq
DNase-seq on human Medullo
3 DNAse hypersensitive region DNase-Hypersensitivity seq
DNase-seq on human HA-sp
3 DNAse hypersensitive region DNase-Hypersensitivity seq
DNase-seq on human Gliobla
3 DNAse hypersensitive region DNase-Hypersensitivity seq
DNase-seq on human HA-h
3 DNAse hypersensitive region DNase-Hypersensitivity seq
DNase-seq on human HBMEC
2 DNAse hypersensitive region DNase-Hypersensitivity seq
DNase-seq on human NH-A
1 DNAse hypersensitive region DNase-Hypersensitivity seq
DNase-seq on human SK-N-SH_RA
1 DNAse hypersensitive region DNase-Hypersensitivity seq
DNase-seq on human BE2-C
1 DNAse hypersensitive region DNase-Hypersensitivity seq