Biblio

Found 24 results

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Journal Article

Lin C-F, Naj AC, San Wang L-. 2013. Analyzing copy number variation using SNP array data: protocols for calling CNV and association tests.. Curr Protoc Hum Genet. 79:Unit1.27..

Ghani M, Reitz C, Cheng R, Vardarajan BNarayan, Jun G, Sato C, Naj A, Rajbhandary R, San Wang L-, Valladares O et al.. 2015. Association of Long Runs of Homozygosity With Alzheimer Disease Among African American Individuals.. JAMA Neurol. 72(11):1313-23.

Naj AC, Jun G, Beecham GW, San Wang L-, Vardarajan BNarayan, Buros J, Gallins PJ, Buxbaum JD, Jarvik GP, Crane PK et al.. 2011. Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.. Nat Genet. 43(5):436-41.

Leung YYee, Ryvkin P, Ungar LH, Gregory BD, San Wang L-. 2013. CoRAL: predicting non-coding RNAs from small RNA-sequencing data.. Nucleic Acids Res. 41(14):e137.

Leung YYee, Kuksa PP, Amlie-Wolf A, Valladares O, Ungar LH, Kannan S, Gregory BD, San Wang L-. 2016. DASHR: database of small human noncoding RNAs.. Nucleic Acids Res. 44(D1):D216-22.

Lin C-F, Valladares O, D Childress M, Klevak E, Geller ET, Hwang Y-C, Tsai EA, Schellenberg GD, San Wang L-. 2013. DRAW+SneakPeek: analysis workflow and quality metric management for DNA-seq experiments.. Bioinformatics. 29(19):2498-500.

Naj AC, Jun G, Reitz C, Kunkle BW, Perry W, Park YSon, Beecham GW, Rajbhandary RA, Hamilton-Nelson KL, San Wang L- et al.. 2014. Effects of multiple genetic loci on age at onset in late-onset Alzheimer disease: a genome-wide association study.. JAMA Neurol. 71(11):1394-404.

Butkiewicz M, Blue EE, Leung YYee, Jian X, Marcora E, Renton AE, Kuzma A, San Wang L-, Koboldt DC, Haines JL et al.. 2018. Functional annotation of genomic variants in studies of late-onset Alzheimer's disease.. Bioinformatics. 34(16):2724-2731.

Kunkle BW, Grenier-Boley B, Sims R, Bis JC, Damotte V, Naj AC, Boland A, Vronskaya M, van der Lee SJ, Amlie-Wolf A et al.. 2019. Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing.. Nat Genet. 51(3):414-430.

Blue EE, Bis JC, Dorschner MO, Tsuang DW, Barral SM, Beecham G, Below JE, Bush WS, Butkiewicz M, Cruchaga C et al.. 2018. Genetic Variation in Genes Underlying Diverse Dementias May Explain a Small Proportion of Cases in the Alzheimer's Disease Sequencing Project.. Dement Geriatr Cogn Disord. 45(1-2):1-17.

Ryvkin P, Leung YYee, Silverman IM, Childress M, Valladares O, Dragomir I, Gregory BD, San Wang L-. 2013. HAMR: high-throughput annotation of modified ribonucleotides.. RNA. 19(12):1684-92.

Hwang Y-C, Zheng Q, Gregory BD, San Wang L-. 2013. High-throughput identification of long-range regulatory elements and their target promoters in the human genome.. Nucleic Acids Res. 41(9):4835-46.

Hwang Y-C, Lin C-F, Valladares O, Malamon J, Kuksa PP, Zheng Q, Gregory BD, San Wang L-. 2015. HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.. Bioinformatics. 31(8):1290-2.

Höglinger GU, Melhem NM, Dickson DW, Sleiman PMA, San Wang L-, Klei L, Rademakers R, de Silva R, Litvan I, Riley DE et al.. 2011. Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.. Nat Genet. 43(7):699-705.

Mirarab S, Nguyen N, Guo S, San Wang L-, Kim J, Warnow T. 2015. PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.. J Comput Biol. 22(5):377-86.

Naj AC, Lin H, Vardarajan BN, White S, Lancour D, Ma Y, Schmidt M, Sun F, Butkiewicz M, Bush WS et al.. 2018. Quality control and integration of genotypes from two calling pipelines for whole genome sequence data in the Alzheimer's disease sequencing project.. Genomics.

Sims R, van der Lee SJ, Naj AC, Bellenguez C, Badarinarayan N, Jakobsdottir J, Kunkle BW, Boland A, Raybould R, Bis JC et al.. 2017. Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.. Nat Genet. 49(9):1373-1384.

San Wang L-, Naj AC, Graham RR, Crane PK, Kunkle BW, Cruchaga C, Murcia JDGonzalez, Cannon-Albright L, Baldwin CT, Zetterberg H et al.. 2015. Rarity of the Alzheimer disease-protective APP A673T variant in the United States.. JAMA Neurol. 72(2):209-16.

Amlie-Wolf A, Ryvkin P, Tong R, Dragomir I, Suh ER, Xu Y, Van Deerlin VM, Gregory BD, Kwong LK, Trojanowski JQ et al.. 2015. Transcriptomic Changes Due to Cytoplasmic TDP-43 Expression Reveal Dysregulation of Histone Transcripts and Nuclear Chromatin.. PLoS One. 10(10):e0141836.

Jun GR, Chung J, Mez J, Barber R, Beecham GW, Bennett DA, Buxbaum JD, Byrd GS, Carrasquillo MM, Crane PK et al.. 2017. Transethnic genome-wide scan identifies novel Alzheimer's disease loci.. Alzheimers Dement. 13(7):727-738.

Ryvkin P, Leung YYee, Ungar LH, Gregory BD, San Wang L-. 2014. Using machine learning and high-throughput RNA sequencing to classify the precursors of small non-coding RNAs.. Methods. 67(1):28-35.

Reitz C, Jun G, Naj A, Rajbhandary R, Vardarajan BNarayan, San Wang L-, Valladares O, Lin C-F, Larson EB, Graff-Radford NR et al.. 2013. Variants in the ATP-binding cassette transporter (ABCA7), apolipoprotein E ϵ4,and the risk of late-onset Alzheimer disease in African Americans.. JAMA. 309(14):1483-92.

Vardarajan BN, Barral S, Jaworski J, Beecham GW, Blue E, Tosto G, Reyes-Dumeyer D, Medrano M, Lantigua R, Naj A et al.. 2018. Whole genome sequencing of Caribbean Hispanic families with late-onset Alzheimer's disease.. Ann Clin Transl Neurol. 5(4):406-417.

Vardarajan BN, Barral S, Jaworski J, Beecham GW, Blue E, Tosto G, Reyes-Dumeyer D, Medrano M, Lantigua R, Naj A et al.. 2018. Whole genome sequencing of Caribbean Hispanic families with late-onset Alzheimer's disease.. Ann Clin Transl Neurol. 5(4):406-417.