This seventh ADSP data release on April 12, 2016 includes:
(1) WES and WGS SNV VCF files
(2) WES and WGS Indel PLINK files
Please use the release notes provided by dbGaP to obtain detailed information about study release updates.
ADSP Data Available through dbGaP:
ADSP - Whole Genome Sequencing | ADSP - Whole Exome Sequencing | Comments | |
---|---|---|---|
DNA-Seq (BAM) | n=578 | n=10913 | Sequence data available (plus n=38 replications w/out genotype data) |
Concordant SNV Genotypes (PLINK format) | N/A | n=10913 | QC'ed genotypes that are concordant between the Atlas (Baylor's) and GATK (Broad's) calling pipelines (a subset of the consensus genotype set) |
Consensus Genotypes (PLINK and VCF format) | n=578 | n=10913 | QC'ed genotypes that are concordant between Atlas and GATK pipelines as well as those that that were called uniquely by Atlas or GATK |
Concordant Indel Genotypes (PLINK format) | n=578 | n=10913 | QC'ed genotypes that are concordant between the Atlas and GATK calling pipelines |
Phenotype Data | n=4735 | n=10913 | Data of n=53 phenotype variables available (plus administrative data), including APOE genotype. WGS phenotypes include data of connecting family members. |
Past Data Releases:
The ADSP data portal provides a customized interface for users to quickly identify and retrieve files by covariates, phenotypes, and data properties such as sequencing facility or coverage.
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