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Kuksa, Pavel P
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2021
Amlie-Wolf A
,
Kuksa PP
,
Lee C-Y
,
Mlynarski E
,
Leung YYee
,
San Wang L-
. 2021.
Using INFERNO to Infer the Molecular Mechanisms Underlying Noncoding Genetic Associations.
.
Methods Mol Biol. 2254:73-91.
PubMed
2020
Kuksa PP
,
Amlie-Wolf A
,
Hwang Y-C
,
Valladares O
,
Gregory BD
,
San Wang L-
. 2020.
HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions.
.
NAR Genom Bioinform. 2(2):lqaa022.
PubMed
Kuksa PP
,
Li F
,
Kannan S
,
Gregory BD
,
Leung YYee
,
San Wang L-
. 2020.
HiPR: High-throughput probabilistic RNA structure inference.
.
Comput Struct Biotechnol J. 18:1539-1547.
PubMed
Kuksa PP
,
Lee C-Y
,
Amlie-Wolf A
,
Gangadharan P
,
Mlynarski EE
,
Chou Y-F
,
Lin H-J
,
Issen H
,
Greenfest-Allen E
,
Valladares O
et al.
. 2020.
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.
.
Bioinformatics. 36(12):3879-3881.
PubMed
2019
Kuksa PP
,
Amlie-Wolf A
,
Katanić Ž
,
Valladares O
,
San Wang L-
,
Leung YYee
. 2019.
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.
.
Bioinformatics. 35(6):1033-1039.
PubMed
2018
Amlie-Wolf A
,
Tang M
,
Mlynarski EE
,
Kuksa PP
,
Valladares O
,
Katanić Ž
,
Tsuang D
,
Brown CD
,
Schellenberg GD
,
San Wang L-
. 2018.
INFERNO: inferring the molecular mechanisms of noncoding genetic variants.
.
Nucleic Acids Res. 46(17):8740-8753.
PubMed
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