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Biblio

Author Title [ Type(Desc)] Year
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Journal Article
Srinivasan D, Erus G, Doshi J, Wolk DA, Shou H, Habes M, Davatzikos C.  2020.  A comparison of Freesurfer and multi-atlas MUSE for brain anatomy segmentation: Findings about size and age bias, and inter-scanner stability in multi-site aging studies.. Neuroimage. 223:117248.
Kuksa PP, Amlie-Wolf A, Katanić Ž, Valladares O, San Wang L-, Leung YYee.  2019.  DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.. Bioinformatics. 35(6):1033-1039.
Kunji K, Ullah E, Nato AQ, Wijsman EM, Saad M.  2018.  GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data.. Bioinformatics. 34(9):1591-1593.
Wheeler NR, Benchek P, Kunkle BW, Hamilton-Nelson KL, Warfe M, Fondran JR, Haines JL, Bush WS.  2020.  Hadoop and PySpark for reproducibility and scalability of genomic sequencing studies.. Pac Symp Biocomput. 25:523-534.
Amlie-Wolf A, Tang M, Mlynarski EE, Kuksa PP, Valladares O, Katanić Ž, Tsuang D, Brown CD, Schellenberg GD, San Wang L-.  2018.  INFERNO: inferring the molecular mechanisms of noncoding genetic variants.. Nucleic Acids Res. 46(17):8740-8753.
Zhou Z, Wang W, San Wang L-, Zhang NRuonan.  2018.  Integrative DNA copy number detection and genotyping from sequencing and array-based platforms.. Bioinformatics. 34(14):2349-2355.
Butkiewicz M, Haines JL, Bush WS.  2017.  Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants.. Bioinformatics. 33(10):1561-1562.
Bush WS, Wheeler N, Beaulieu-Jones B, Darabos C.  2020.  Packaging Biocomputing Software to Maximize Distribution and Reuse.. Pac Symp Biocomput. 25:739-742.
Kuksa PP, Lee C-Y, Amlie-Wolf A, Gangadharan P, Mlynarski EE, Chou Y-F, Lin H-J, Issen H, Greenfest-Allen E, Valladares O et al..  2020.  SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.. Bioinformatics. 36(12):3879-3881.
Amlie-Wolf A, Kuksa PP, Lee C-Y, Mlynarski E, Leung YYee, San Wang L-.  2021.  Using INFERNO to Infer the Molecular Mechanisms Underlying Noncoding Genetic Associations.. Methods Mol Biol. 2254:73-91.
Lyon MS, Andrews SJ, Elsworth B, Gaunt TR, Hemani G, Marcora E.  2021.  The variant call format provides efficient and robust storage of GWAS summary statistics.. Genome Biol. 22(1):32.

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