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Genomics
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Journal Article
Kuksa PP
,
Amlie-Wolf A
,
Katanić Ž
,
Valladares O
,
San Wang L-
,
Leung YYee
. 2019.
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.
.
Bioinformatics. 35(6):1033-1039.
PubMed
Hofer E
,
Roshchupkin GV
,
Adams HHH
,
Knol MJ
,
Lin H
,
Li S
,
Zare H
,
Ahmad S
,
Armstrong NJ
,
Satizabal CL
et al.
. 2020.
Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.
.
Nat Commun. 11(1):4796.
PubMed
Wheeler NR
,
Benchek P
,
Kunkle BW
,
Hamilton-Nelson KL
,
Warfe M
,
Fondran JR
,
Haines JL
,
Bush WS
. 2020.
Hadoop and PySpark for reproducibility and scalability of genomic sequencing studies.
.
Pac Symp Biocomput. 25:523-534.
PubMed
Novikova G
,
Kapoor M
,
Tcw J
,
Abud EM
,
Efthymiou AG
,
Chen SX
,
Cheng H
,
Fullard JF
,
Bendl J
,
Liu Y
et al.
. 2021.
Integration of Alzheimer's disease genetics and myeloid genomics identifies disease risk regulatory elements and genes.
.
Nat Commun. 12(1):1610.
PubMed
Zhou Z
,
Wang W
,
San Wang L-
,
Zhang NRuonan
. 2018.
Integrative DNA copy number detection and genotyping from sequencing and array-based platforms.
.
Bioinformatics. 34(14):2349-2355.
PubMed
Butkiewicz M
,
Haines JL
,
Bush WS
. 2017.
Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants.
.
Bioinformatics. 33(10):1561-1562.
PubMed
Kuksa PP
,
Lee C-Y
,
Amlie-Wolf A
,
Gangadharan P
,
Mlynarski EE
,
Chou Y-F
,
Lin H-J
,
Issen H
,
Greenfest-Allen E
,
Valladares O
et al.
. 2020.
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.
.
Bioinformatics. 36(12):3879-3881.
PubMed
Lyon MS
,
Andrews SJ
,
Elsworth B
,
Gaunt TR
,
Hemani G
,
Marcora E
. 2021.
The variant call format provides efficient and robust storage of GWAS summary statistics.
.
Genome Biol. 22(1):32.
PubMed
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