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Valladares, Otto
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2020
Kuksa PP
,
Amlie-Wolf A
,
Hwang Y-C
,
Valladares O
,
Gregory BD
,
San Wang L-
. 2020.
HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions.
.
NAR Genom Bioinform. 2(2):lqaa022.
PubMed
Kuksa PP
,
Lee C-Y
,
Amlie-Wolf A
,
Gangadharan P
,
Mlynarski EE
,
Chou Y-F
,
Lin H-J
,
Issen H
,
Greenfest-Allen E
,
Valladares O
et al.
. 2020.
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.
.
Bioinformatics. 36(12):3879-3881.
PubMed
2019
Kuksa PP
,
Amlie-Wolf A
,
Katanić Ž
,
Valladares O
,
San Wang L-
,
Leung YYee
. 2019.
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.
.
Bioinformatics. 35(6):1033-1039.
PubMed
Kunkle BW
,
Grenier-Boley B
,
Sims R
,
Bis JC
,
Damotte V
,
Naj AC
,
Boland A
,
Vronskaya M
,
van der Lee SJ
,
Amlie-Wolf A
et al.
. 2019.
Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing.
.
Nat Genet. 51(3):414-430.
PubMed
2018
Amlie-Wolf A
,
Tang M
,
Mlynarski EE
,
Kuksa PP
,
Valladares O
,
Katanić Ž
,
Tsuang D
,
Brown CD
,
Schellenberg GD
,
San Wang L-
. 2018.
INFERNO: inferring the molecular mechanisms of noncoding genetic variants.
.
Nucleic Acids Res. 46(17):8740-8753.
PubMed
Leung YYee
,
Valladares O
,
Chou Y-F
,
Lin H-J
,
Kuzma AB
,
Cantwell L
,
Qu L
,
Gangadharan P
,
Salerno WJ
,
Schellenberg GD
et al.
. 2018.
VCPA: genomic Variant Calling pipeline and data management tool for Alzheimer's Disease Sequencing Project.
.
Bioinformatics.
PubMed
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